The Basics

General Information

Phoenix Concepts 
Quick Tour of Phoenix 
The Phoenix User Interface 
Common Tasks 

Help Center – Access release notes, known issues, training, and support

Examples

Workflows and Templates example 
CDISC Data Preparer Example 
Ratios and baseline adjustments example 
(Data Wizard)
Error bars and overlaying plots example 
IVIVC workflow example 
Maximum Likelihood Models examples 
(NLME)
PML examples 
PsN examples 
SAS example 
Tables examples
– Create report-ready table from NCA results example 
– Using custom tables example 
– Joining raw data and modeling output in tables example 

WNL examples:
– NCA examples 
– Bioequivalence model examples 
– Crossover design example 
– Deconvolution example 
– Linear mixed effects model examples 
– NonParametric Superposition example 
– Semicompartmental model example 
– PK model examples 
– More nonlinear model examples 

Video tutorials (Help Center):
– Get Started with IVIVC Toolkit 
– Get Started with Phoenix WinNonlin 
– Get Started with Phoenix NLME  

Import/Export

Maximum Likelihood Models

Exporting to Microsoft Word 
CDISC Navigator 
Integral Plugin 
PK Submit 
Watson Import
ODBC Object (32-bit only)

Maximum Likelihood Models 
Object and built-in model interface 
Graphical model interface 
Textual model interface 
Run modes 
Model engines 
Model output 
Differential Equations in NLME 
Prediction and Prediction Variance Corrections 
Shrinkage Calculation 
Maximum Likelihood Model Comparer 
Pharmacometrics Modeling Language (PML)

Data Management

Computation Tools

BQL Object 
CDISC Data Preparer 
Data Link Object 
Data Wizard 
Worksheet-Related Objects 
– Append Worksheets 
– Crossproduct Worksheets 
– Enumerate Worksheets 
– Join Worksheets 
– Merge Worksheets 
– Pivot Worksheet 
– Rank Worksheet 
– Split Worksheet 
– Stacker 

Descriptive Statistics 
Phoenix WinNonlin 
– Bioequivalence Object 
– Convolution Object 
– Crossover Object 
– Deconvolution Object 
– Linear Mixed Effects Object 
Ratios and Differences 

Plots

IVIVC

Plot Objects 
Plots user interface 
Plotting results 

IVIVC Tools 
IVIVC Object 
Levy Plot 
Loo-Riegelman 
Wagner-Nelson 

NonCompartmental Analysis

Reporting

NCA Object 
NCA parameter formulas 
NonParametric Superposition Object 
Semicompartmental Modeling Object 

Reporter Object 
Table Object 

Least-Squares Regression Models

External Software

ASCII Model dosing constants 
Indirect Response models 
Linear models 
Michaelis-Menten models 
PD output parameters in a PK-PD model 
Pharmacodynamic models 
Pharmacokinetic models 
Sigmoidal and Dissolution models 

ggquickeda (open source)
NONMEM Shell 
NONMEM Comparer 
PsN Shell 
R Shell 
SAS Shell 
SigmaPlot Shell 

Job Execution Management

Installation and Validation

Job Management System 
Remote Processing Server 
NLME Control modes configuration 
NLME Job control for parallel and remote execution 

Phoenix Installation and Licensing 
Validation Suite 

AutoPilot Toolkit (32-bit only)