Installation and Configuration

General Information

System requirements
Pirana Installation 
Pirana and Remote Hosts
Configuration Settings

Pirana Release Notes
Known Issues
Support website 
Training website 

Overview

Data Inspection

An Overview of Pirana
Main window
Projects
Folders
Folder contents
Files
Models

Data Inspector 
Correlation calculator 
Check dataset 

NLME Model Management

NONMEM Model Management

Create or edit a model using Model Builder
Generate a new NLME model using a template
Run initial estimates
Duplicate models
Batch editing of models
Open the input dataset
Attach folders to selected model
Rename an NLME model file
View difference with reference model
Delete a model
Fit a model
Execute a model run with Model Executor
View model results
Import results from a model directory

Create NONMEM models
Add notes and view model properties
Duplicate models
Batch editing of models
Create dataset template R script
Open the input dataset
Attach folders to selected model
Rename a NONMEM model file
Generate NM parallelization file
Generate SCM configuration file
Execute a model
View intermediate results of active runs
Model translation
Import results from a model directory
Diagnostic graphs with Xpose4
NONMEM VPC plots with PsN and Xpose4
Automated Modeling Workflow Example

Darwin Searches

Using Model Results Shiny App

Darwin Searches 
Create a Darwin search 
Execute a Darwin search 
Stop a search
Darwin (JS) options for NONMEM models
Darwin (legacy) options for NONMEM models
Darwin Reporter
Examples (.zip file)

Model Results Shiny app
Getting started
Preview plots
Preview tables
Tagging a diagnostic
Setup the output report

Results and Output within Pirana

Using VPC Results Shiny App

View and compare parameter estimates
View execution log
Calculate AIC and BIC
Matrices
R scripts for graphs and file processing

Generate Visual Predictive Check (VPC)
Getting started
Parameterizing VPC

Reporting Tools within Pirana

Special References

Run reports
Run records
Visual run record

Keyboard shortcuts
Command line parameters
Troubleshooting/FAQ